Domain ID e4hubM1

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Ribosomal proteins S24e, L23 and L15e
  • T: Ribosomal proteins S24e, L23 and L15e
  • F: Ribosomal_L15e
UID: 001007466
Type: Automatic domain
Parent: e1vqoM1
Range: M:1-195
Ligands: CL MG NA
PDB: 4hub
PDB Description:
Hsap BLAST neighbor: P61313
Species:

Structure of domain e4hubM1

Domains in the same chain:

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e4hubM1 M:1-195 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e

Domains in the same PDB:

e4hub11 1:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4hub21 2:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e4hub31 3:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4hubA1 A:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4hubA2 A:91-237 SH3 SH3 SH3
e4hubB1 B:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e4hubC1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e4hubD1 D:9-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e4hubE1 E:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e4hubE2 E:80-174 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e4hubF1 F:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e4hubG3 G:6-112,G:184-260 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e4hubG1 G:112-186 Insertion domain in 60S ribosomal protein rpP0 (L10P) Insertion domain in 60S ribosomal protein rpP0 (L10P) Insertion domain in 60S ribosomal protein rpP0 (L10P)
e4hubH1 H:3-177 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e4hubI6 I:5-69 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e4hubI5 I:67-156 HTH HTH Ribosomal protein L11, C-terminal domain
e4hubJ1 J:2-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e4hubK1 K:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e4hubL1 L:1-151 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e4hubM1 M:1-195 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e4hubN1 N:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4hubO1 O:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e4hubP1 P:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e4hubP2 P:55-144 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e4hubQ1 Q:1-95 SH3 SH3 SH3
e4hubR1 R:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e4hubS1 S:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e4hubT1 T:1-119 SH3 SH3 SH3
e4hubU1 U:1-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4hubV1 V:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e4hubW1 W:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e4hubX1 X:2-91 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e4hubY1 Y:95-238 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e4hubZ1 Z:7-89 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e4hubM1 of H-group "Ribosomal proteins S24e, L23 and L15e":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4hubF1 M:x,y,z->F:X,Y,Z L30e-like Interaction Interface Pymol
e4hub31 M:X,Y,Z->3:x,y,z Rubredoxin-related Interaction Interface Pymol