Domain ID e4i9qA4

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: DNA_pol_B_exo1
UID: 001710716
Type: Automatic domain
Parent: e1tgoA6
Range: A:1-375
Ligands: XG4
PDB: 4i9q
PDB Description: DNA POLYMERASE
UniProt: Q38087
Species: Enterobacteria phage RB69

Structure of domain e4i9qA4

Domains in the same chain:

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e4i9qA4 A:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4i9qA1 A:376-468,A:575-732 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4i9qA3 A:469-496,A:546-574 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4i9qA2 A:733-895 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e4i9qA4 A:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4i9qA1 A:376-468,A:575-732 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4i9qA3 A:469-496,A:546-574 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4i9qA2 A:733-895 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I
e4i9qB1 B:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4i9qB2 B:376-468,B:575-732 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4i9qB4 B:469-503,B:531-574 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4i9qB3 B:733-900 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e4i9qA4 of H-group "Ribonuclease H-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4i9qA1 A:x,y,z->A:-X,Y-1/2,-Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4i9qA2 A:-X,Y-1/2,-Z->A:x,y,z "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4i9qB1 A:X-1,Y,Z->B:x,y,z Ribonuclease H-like Interaction Interface Pymol