ECOD: domain e4ifdD1

Domain ID e4ifdD1

A: a+b two layers
X: Ribosomal protein S5 domain 2-like
H: Ribosomal protein S5 domain 2-like
T: Ribosomal protein S5 domain 2-like
F: RNase_PH

UID:	000222579
Type:	Automatic domain
Parent:	e2nn6D2
Range:	D:1-125
PDB:	4ifd
PDB Description:	Exosome complex component RRP46
UniProt:	P53256
Hsap BLAST neighbor:	Q9NQT4
Species:

Domains in the same chain:

Download Pymol

e4ifdD1	D:1-125	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e4ifdD2	D:126-223	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2

Domains in the same PDB:

e4ifdA5	A:2-186	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e4ifdA6	A:187-301	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e4ifdB2	B:1-152	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e4ifdB1	B:153-242	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e4ifdC2	C:7-99,C:121-249,C:270-286	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e4ifdC1	C:287-394	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e4ifdD1	D:1-125	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e4ifdD2	D:126-223	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e4ifdE1	E:-1-180	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e4ifdE2	E:181-265	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e4ifdF1	F:4-22,F:42-185	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e4ifdF2	F:183-248	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e4ifdG5	G:1-63	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Ribosomal L27 protein
e4ifdG4	G:62-151	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4ifdG2	G:152-236	Alpha-lytic protease prodomain-like	KH-domains	Eukaryotic type KH-domain (KH-domain type I)
e4ifdH2	H:2-17,H:50-101	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Ribosomal L27 protein
e4ifdH5	H:102-196	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4ifdH4	H:196-245,H:275-357	Alpha-lytic protease prodomain-like	KH-domains	Eukaryotic type KH-domain (KH-domain type I)
e4ifdI2	I:1-68,I:106-115	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Ribosomal L27 protein
e4ifdI1	I:126-162,I:185-291	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4ifdJ5	J:9-236	HAD domain-like	HAD domain-related	PIN domain-like
e4ifdJ4	J:237-329,J:364-399	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4ifdJ2	J:400-494	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4ifdJ1	J:495-910	OB-fold	RNB domain-like	RNB domain-like
e4ifdJ3	J:911-1001	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins

Structural contacts of domain e4ifdD1 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4ifdG4	D:X,Y,Z->G:x,y,z	Nucleic acid-binding proteins	Interaction Interface Pymol
e4ifdG5	D:X,Y,Z->G:x,y,z	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Interaction Interface Pymol
e4ifdC1	D:x,y,z->C:X,Y,Z	Ribonuclease PH domain 2	Interaction Interface Pymol
e4ifdC2	D:x,y,z->C:X,Y,Z	Ribosomal protein S5 domain 2-like	Interaction Interface Pymol
e4ifdA6	D:x,y,z->A:X,Y,Z	Ribonuclease PH domain 2	Interaction Interface Pymol
e4ifdA5	D:x,y,z->A:X,Y,Z	Ribosomal protein S5 domain 2-like	Interaction Interface Pymol
e4ifdI1	D:X,Y,Z->I:x,y,z	Nucleic acid-binding proteins	Interaction Interface Pymol
e4ifdF1	D:X,Y,Z->F:x,y,z	Ribosomal protein S5 domain 2-like	Interaction Interface Pymol