Domain ID e4ifdE1

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Unmapped domains
UID: 000222581
Type: Automatic domain
Parent: e2nn6E2
Range: E:-1-180
PDB: 4ifd
PDB Description: Exosome complex component RRP42
UniProt: Q12277
Hsap BLAST neighbor: Q15024
Species:

Structure of domain e4ifdE1

Domains in the same chain:

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e4ifdE1 E:-1-180 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4ifdE2 E:181-265 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2

Domains in the same PDB:

e4ifdA5 A:2-186 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4ifdA6 A:187-301 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e4ifdB2 B:1-152 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4ifdB1 B:153-242 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e4ifdC2 C:7-99,C:121-249,C:270-286 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4ifdC1 C:287-394 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e4ifdD1 D:1-125 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4ifdD2 D:126-223 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e4ifdE1 E:-1-180 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4ifdE2 E:181-265 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e4ifdF1 F:4-22,F:42-185 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4ifdF2 F:183-248 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e4ifdG5 G:1-63 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e4ifdG4 G:62-151 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4ifdG2 G:152-236 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e4ifdH2 H:2-17,H:50-101 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e4ifdH5 H:102-196 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4ifdH4 H:196-245,H:275-357 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e4ifdI2 I:1-68,I:106-115 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e4ifdI1 I:126-162,I:185-291 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4ifdJ5 J:9-236 HAD domain-like HAD domain-related PIN domain-like
e4ifdJ4 J:237-329,J:364-399 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4ifdJ2 J:400-494 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4ifdJ1 J:495-910 OB-fold RNB domain-like RNB domain-like
e4ifdJ3 J:911-1001 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Structural contacts of domain e4ifdE1 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4ifdH2 E:X,Y,Z->H:x,y,z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e4ifdH4 E:X,Y,Z->H:x,y,z KH-domains Interaction Interface Pymol
e4ifdH5 E:X,Y,Z->H:x,y,z Nucleic acid-binding proteins Interaction Interface Pymol
e4ifdF2 E:X,Y,Z->F:x,y,z Ribonuclease PH domain 2 Interaction Interface Pymol
e4ifdF1 E:X,Y,Z->F:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4ifdJ4 E:X,Y,Z->J:x,y,z Nucleic acid-binding proteins Interaction Interface Pymol
e4ifdJ5 E:X,Y,Z->J:x,y,z HAD domain-related Interaction Interface Pymol
e4ifdB2 E:x,y,z->B:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4ifdC2 E:-X+2,Y-1/2,-Z+2->C:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol