Domain ID e4ifvA6

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: RNase_H
UID: 001186515
Type: Automatic domain
Parent: e1mu2A3
Range: A:429-554
Ligands: DMS FMQ MG
PDB: 4ifv
PDB Description: Exoribonuclease H, p66 RT
UniProt: P03366
Hsap BLAST neighbor: P10266
Species:

Structure of domain e4ifvA6

Domains in the same chain:

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e4ifvA8 A:-1-239 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4ifvA7 A:240-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e4ifvA5 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e4ifvA6 A:429-554 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e4ifvA8 A:-1-239 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4ifvA7 A:240-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e4ifvA5 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e4ifvA6 A:429-554 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4ifvB5 B:5-230 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4ifvB1 B:231-304 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e4ifvB2 B:305-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e4ifvA6 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4ifvB2 A:X,Y,Z->B:x,y,z RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e4ifvB1 A:X,Y,Z->B:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e4ifvA6 A:x,y,z->A:-X,Y,-Z Ribonuclease H-like Interaction Interface Pymol
e4ifvA6 A:-X,Y,-Z->A:x,y,z Ribonuclease H-like Interaction Interface Pymol
e4ifvA8 A:-X+1/2,Y-1/2,-Z+1->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4ifvB5 A:x,y,z->B:-X+1/2,Y-1/2,-Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol