| UID: | 000222821 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1ogwA1 |
| Range: | B:-3-76 |
| Ligands: | ATP EDO SO4 |
| PDB: | 4ii2 |
| PDB Description: | Ubiquitin-60S ribosomal protein L40 |
| UniProt: | P0CH07 |
| Hsap BLAST neighbor: | P62987 |
| Species: |
Structure of domain e4ii2B1
Domains in the same chain:
| e4ii2B1 | B:-3-76 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
Domains in the same PDB:
| e4ii2A4 | A:13-170,A:259-393 | Rossmann-like | Rossmann-related | Activating enzymes of the ubiquitin-like proteins |
| e4ii2A3 | A:174-259 | cradle loop barrel | RIFT-related | Alanine racemase-C |
| e4ii2A5 | A:399-763,A:787-902 | Rossmann-like | Rossmann-related | Activating enzymes of the ubiquitin-like proteins |
| e4ii2A2 | A:903-1012 | beta-Grasp | E2-binding domain of E1 | E2-binding domain of E1 |
| e4ii2B1 | B:-3-76 | beta-Grasp | Ubiquitin-related | Ubiquitin-like |
| e4ii2C1 | C:1-149 | UBC-like | UBC-like | UBC-like |
Structural contacts of domain e4ii2B1 of H-group "Ubiquitin-related":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e4ii2A5 | B:x,y,z->A:X,Y,Z | Rossmann-related | Interaction Interface Pymol |
| e4ii2A4 | B:x,y,z->A:X,Y,Z | Rossmann-related | Interaction Interface Pymol |
| e4ii2A3 | B:x,y,z->A:X,Y,Z | RIFT-related | Interaction Interface Pymol |
| e4ii2A5 | B:-X-1,Y-1/2,-Z+1/2->A:x,y,z | Rossmann-related | Interaction Interface Pymol |
| e4ii2C1 | B:X,Y,Z->C:x,y,z | UBC-like | Interaction Interface Pymol |
