| UID: | 001184114 |
|---|---|
| Type: | Automatic domain |
| Parent: | e3rayA1 |
| Range: | A:195-388 |
| Ligands: | UNX ZN |
| PDB: | 4ijd |
| PDB Description: | Histone-lysine N-methyltransferase PRDM9 |
| UniProt: | Q9NQV7 |
| Hsap BLAST neighbor: | Q9NQV7 |
| Species: | Homo sapiens |
Structure of domain e4ijdA3
Domains in the same chain:
| e4ijdA3 | A:195-388 | beta-clip | SET domain-like | SET domain-like |
| e4ijdA4 | A:389-413 | beta-beta-alpha zinc fingers | beta-beta-alpha zinc fingers | beta-beta-alpha zinc fingers |
Domains in the same PDB:
Structural contacts of domain e4ijdA3 of H-group "SET domain-like":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e4ijdA3 | A:x,y,z->A:-X,Y-1/2,-Z | SET domain-like | Interaction Interface Pymol |
| e4ijdA4 | A:-X,Y-1/2,-Z->A:x,y,z | beta-beta-alpha zinc fingers | Interaction Interface Pymol |
| e4ijdA3 | A:-X,Y-1/2,-Z->A:x,y,z | SET domain-like | Interaction Interface Pymol |
| e4ijdA4 | A:-X+1,Y-1/2,-Z->A:x,y,z | beta-beta-alpha zinc fingers | Interaction Interface Pymol |
| e4ijdB1 | A:X,Y,Z->B:x,y,z | SET domain-like | Interaction Interface Pymol |
| e4ijdB3 | A:X,Y,Z->B:x,y,z | beta-beta-alpha zinc fingers | Interaction Interface Pymol |
| e4ijdB1 | A:-X+1,Y-1/2,-Z->B:x,y,z | SET domain-like | Interaction Interface Pymol |
| e4ijdB1 | A:-X+1,Y-1/2,-Z+1->B:x,y,z | SET domain-like | Interaction Interface Pymol |
| e4ijdB3 | A:x,y,z->B:-X+1,Y-1/2,-Z | beta-beta-alpha zinc fingers | Interaction Interface Pymol |
