ECOD: domain e4ijdA4

Domain ID e4ijdA4

A: few secondary structure elements
X: beta-beta-alpha zinc fingers
H: beta-beta-alpha zinc fingers
T: beta-beta-alpha zinc fingers
F: zf-C2H2_5

UID:	001184115
Type:	Automatic and representative domain
Range:	A:389-413
Ligands:	UNX ZN
PDB:	4ijd
PDB Description:	Histone-lysine N-methyltransferase PRDM9
UniProt:	Q9NQV7
Hsap BLAST neighbor:	Q9NQV7
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e4ijdA3	A:195-388	beta-clip	SET domain-like	SET domain-like
e4ijdA4	A:389-413	beta-beta-alpha zinc fingers	beta-beta-alpha zinc fingers	beta-beta-alpha zinc fingers

Domains in the same PDB:

e4ijdA3	A:195-388	beta-clip	SET domain-like	SET domain-like
e4ijdA4	A:389-413	beta-beta-alpha zinc fingers	beta-beta-alpha zinc fingers	beta-beta-alpha zinc fingers
e4ijdB1	B:195-378	beta-clip	SET domain-like	SET domain-like
e4ijdB3	B:379-411	beta-beta-alpha zinc fingers	beta-beta-alpha zinc fingers	beta-beta-alpha zinc fingers

Structural contacts of domain e4ijdA4 of H-group "beta-beta-alpha zinc fingers":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4ijdA3	A:x,y,z->A:-X,Y-1/2,-Z	SET domain-like	Interaction Interface Pymol
e4ijdA3	A:x,y,z->A:-X+1,Y-1/2,-Z	SET domain-like	Interaction Interface Pymol
e4ijdB1	A:X,Y,Z->B:x,y,z	SET domain-like	Interaction Interface Pymol