Domain ID e4iocC2

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L4
  • H: Ribosomal protein L4
  • T: Ribosomal protein L4
  • F: Ribosomal_L4
UID: 001254222
Type: Automatic domain
Parent: e1dmgA1
Range: C:2-198
Ligands: MG
PDB: 4ioc
PDB Description: 50S RIBOSOMAL PROTEIN L4
UniProt: Q9RXK1
Hsap BLAST neighbor: Q9BYD3
Species: Deinococcus radiodurans

Structure of domain e4iocC2

Domains in the same chain:

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e4iocC2 C:2-198 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4

Domains in the same PDB:

e4ioc11 1:5-54 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4ioc21 2:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e4ioc31 3:1-63 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e4ioc41 4:1-36 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e4iocA1 A:33-127 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4iocA3 A:128-272 SH3 SH3 SH3
e4iocB1 B:1-205 cradle loop barrel RIFT-related Alanine racemase-C
e4iocC2 C:2-198 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e4iocD1 D:1-177 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e4iocE4 E:5-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e4iocE3 E:83-175 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e4iocF1 F:74-144 HTH HTH Ribosomal protein L11, C-terminal domain
e4iocG2 G:30-171 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e4iocH1 H:1-134 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e4iocI1 I:4-144 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e4iocJ1 J:6-141 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e4iocK1 K:1-113 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e4iocL1 L:8-111 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4iocM1 M:2-109 SH3 SH3 SH3
e4iocN1 N:1-117 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e4iocO1 O:1-94 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e4iocP1 P:1-127 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e4iocQ1 Q:1-93 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e4iocR2 R:4-113 SH3 SH3 SH3
e4iocS1 S:1-88 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e4iocS2 S:89-175 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related
e4iocT2 T:2-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e4iocU1 U:1-72 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e4iocV1 V:1-66 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e4iocW1 W:1-55 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e4iocZ1 Z:1-58 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e4iocC2 of H-group "Ribosomal protein L4":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1dmgA1 C:X,Y,Z->I:x,y,z Ribosomal protein L4 Interaction Interface Pymol