Domain ID e4irdA5

Download files:
  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: IMS
UID: 001257157
Type: Automatic domain
Parent: e1t3nA4
Range: A:0-22,A:75-175
Ligands: DZ4 MG
PDB: 4ird
PDB Description: DNA polymerase IV
UniProt: Q47155
Hsap BLAST neighbor: Q9UNA4
Species:

Structure of domain e4irdA5

Domains in the same chain:

Download Pymol

e4irdA5 A:0-22,A:75-175 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4irdA4 A:23-74 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e4irdA7 A:176-236 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4irdA6 A:233-341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Domains in the same PDB:

e4irdA5 A:0-22,A:75-175 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4irdA4 A:23-74 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e4irdA7 A:176-236 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4irdA6 A:233-341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain
e4irdF5 F:0-22,F:75-175 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4irdF4 F:23-74 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e4irdF7 F:176-236 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4irdF6 F:233-341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Structural contacts of domain e4irdA5 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4irdA7 A:x,y,z->A:-X-1,Y-1/2,-Z SAM/DNA-glycosylase Interaction Interface Pymol
e4irdA4 A:x,y,z->A:-X-1,Y-1/2,-Z Hypothetical protein Ta1206-like Interaction Interface Pymol
e4irdA7 A:-X-1,Y-1/2,-Z->A:x,y,z SAM/DNA-glycosylase Interaction Interface Pymol