Domain ID e4irdA6

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  • A: a+b two layers
  • X: Reverse ferredoxin
  • H: Lesion bypass DNA polymerase (Y-family), little finger domain
  • T: Lesion bypass DNA polymerase (Y-family), little finger domain
  • F: IMS_C
UID: 001257158
Type: Automatic domain
Parent: e1jx4A2
Range: A:233-341
PDB: 4ird
PDB Description: DNA polymerase IV
UniProt: Q47155
Species:

Structure of domain e4irdA6

Domains in the same chain:

Download Pymol

e4irdA5 A:0-22,A:75-175 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4irdA4 A:23-74 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e4irdA7 A:176-236 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4irdA6 A:233-341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Domains in the same PDB:

e4irdA5 A:0-22,A:75-175 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4irdA4 A:23-74 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e4irdA7 A:176-236 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4irdA6 A:233-341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain
e4irdF5 F:0-22,F:75-175 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4irdF4 F:23-74 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e4irdF7 F:176-236 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4irdF6 F:233-341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Structural contacts of domain e4irdA6 of H-group "Lesion bypass DNA polymerase (Y-family), little finger domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4irdA7 A:x,y,z->A:-X-1,Y-1/2,-Z SAM/DNA-glycosylase Interaction Interface Pymol
e4irdF6 A:X,Y,Z->F:x,y,z Lesion bypass DNA polymerase (Y-family), little finger domain Interaction Interface Pymol
e4irdF7 A:X,Y,Z->F:x,y,z SAM/DNA-glycosylase Interaction Interface Pymol
e4irdF6 A:-X-1,Y-1/2,-Z-1->F:x,y,z Lesion bypass DNA polymerase (Y-family), little finger domain Interaction Interface Pymol
e4irdA4 A:x,y,z->A:X,Y-1,Z Hypothetical protein Ta1206-like Interaction Interface Pymol