Domain ID e4irkA7

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  • A: alpha arrays
  • X: HhH/H2TH
  • H: SAM/DNA-glycosylase
  • T: SAM domain-like
  • F: IMS_HHH_1
UID: 001257131
Type: Automatic domain
Parent: e1t3nA1
Range: A:176-236
PDB: 4irk
PDB Description: DNA polymerase IV
UniProt: Q47155
Hsap BLAST neighbor: Q9UBZ9
Species:

Structure of domain e4irkA7

Domains in the same chain:

Download Pymol

e4irkA5 A:0-22,A:75-175 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4irkA4 A:23-74 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e4irkA7 A:176-236 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4irkA6 A:233-341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Domains in the same PDB:

e4irkA5 A:0-22,A:75-175 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4irkA4 A:23-74 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e4irkA7 A:176-236 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4irkA6 A:233-341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain
e4irkB4 B:0-22,B:75-175 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4irkB3 B:23-74 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e4irkB6 B:176-236 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4irkB5 B:233-341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Structural contacts of domain e4irkA7 of H-group "SAM/DNA-glycosylase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4irkA5 A:x,y,z->A:-X,Y-1/2,-Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4irkA4 A:x,y,z->A:-X,Y-1/2,-Z Hypothetical protein Ta1206-like Interaction Interface Pymol
e4irkA5 A:-X,Y-1/2,-Z->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol