Domain ID e4irkB5

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  • A: a+b two layers
  • X: Reverse ferredoxin
  • H: Lesion bypass DNA polymerase (Y-family), little finger domain
  • T: Lesion bypass DNA polymerase (Y-family), little finger domain
  • F: IMS_C
UID: 001257166
Type: Automatic domain
Parent: e1jx4A2
Range: B:233-341
PDB: 4irk
PDB Description: DNA polymerase IV
UniProt: Q47155
Species:

Structure of domain e4irkB5

Domains in the same chain:

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e4irkB4 B:0-22,B:75-175 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4irkB3 B:23-74 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e4irkB6 B:176-236 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4irkB5 B:233-341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Domains in the same PDB:

e4irkA5 A:0-22,A:75-175 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4irkA4 A:23-74 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e4irkA7 A:176-236 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4irkA6 A:233-341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain
e4irkB4 B:0-22,B:75-175 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4irkB3 B:23-74 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e4irkB6 B:176-236 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4irkB5 B:233-341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Structural contacts of domain e4irkB5 of H-group "Lesion bypass DNA polymerase (Y-family), little finger domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4irkA6 B:x,y,z->A:X,Y,Z Lesion bypass DNA polymerase (Y-family), little finger domain Interaction Interface Pymol
e4irkA6 B:-X+1,Y-1/2,-Z->A:x,y,z Lesion bypass DNA polymerase (Y-family), little finger domain Interaction Interface Pymol