ECOD: domain e4jcvD4

Domain ID e4jcvD4

A: few secondary structure elements
X: RING/U-box-like
H: RING/U-box-like
T: RING/U-box
F: RecR_ZnF

UID:	001278194
Type:	Automatic domain
Parent:	e1vddA2
Range:	D:54-76
Ligands:	ZN
PDB:	4jcv
PDB Description:	Recombination protein RecR
UniProt:	Q9ZNA2
Species:

Domain
In chain context
In PDB context

Structure of domain e4jcvD4

Domains in the same chain:

Download Pymol

e4jcvD5	D:4-53	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e4jcvD4	D:54-76	RING/U-box-like	RING/U-box-like	RING/U-box
e4jcvD6	D:77-199	HAD domain-like	HAD domain-related	Toprim domain

Domains in the same PDB:

e4jcvA5	A:2-53	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e4jcvA4	A:54-76	RING/U-box-like	RING/U-box-like	RING/U-box
e4jcvA6	A:77-197	HAD domain-like	HAD domain-related	Toprim domain
e4jcvB5	B:2-53	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e4jcvB4	B:54-76	RING/U-box-like	RING/U-box-like	RING/U-box
e4jcvB6	B:77-197	HAD domain-like	HAD domain-related	Toprim domain
e4jcvC5	C:9-53	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e4jcvC4	C:54-76	RING/U-box-like	RING/U-box-like	RING/U-box
e4jcvC6	C:77-199	HAD domain-like	HAD domain-related	Toprim domain
e4jcvD5	D:4-53	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e4jcvD4	D:54-76	RING/U-box-like	RING/U-box-like	RING/U-box
e4jcvD6	D:77-199	HAD domain-like	HAD domain-related	Toprim domain
e4jcvE1	E:3-80	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4jcvE2	E:81-226	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e4jcvF2	F:5-76	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4jcvF1	F:77-227	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like

Structural contacts of domain e4jcvD4 of H-group "RING/U-box-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4jcvC5	D:x,y,z->C:X,Y,Z	SAM/DNA-glycosylase	Interaction Interface Pymol