ECOD: domain e4ji1D1

Domain ID e4ji1D1

A: a+b two layers
X: beta-Grasp
H: Ubiquitin-related
T: Alpha-L RNA-binding motif
F: Ribosomal_S4,S4

UID:	001552484
Type:	Automatic domain
Parent:	e4v4vAD1
Range:	D:2-209
Ligands:	MG ZN
PDB:	4ji1
PDB Description:	RIBOSOMAL PROTEIN S4
UniProt:	P80373
Species:

Domains in the same chain:

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e4ji1D1	D:2-209	beta-Grasp	Ubiquitin-related	Alpha-L RNA-binding motif

Domains in the same PDB:

e4ji1B1	B:7-127,B:157-240	Flavodoxin-like	Ribosomal protein S2/SIS domain	Ribosomal protein S2/SIS domain
e4ji1C3	C:2-106	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e4ji1C4	C:107-207	T-fold	Ribosomal protein S3-C	Ribosomal protein S3-C
e4ji1D1	D:2-209	beta-Grasp	Ubiquitin-related	Alpha-L RNA-binding motif
e4ji1E6	E:5-72	dsRBD-like	dsRNA-binding domain-like	dsRNA-binding domain-like
e4ji1E5	E:73-154	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e4ji1F1	F:1-101	Alpha-beta plaits	Ribosomal protein S6	Ribosomal protein S6
e4ji1G1	G:2-156	Ribosomal protein S7	Ribosomal protein S7	Ribosomal protein S7
e4ji1H1	H:1-66	R3H domain-like	Ribosomal protein S8, N-terminal domain	Ribosomal protein S8, N-terminal domain
e4ji1H2	H:67-138	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain
e4ji1I1	I:2-128	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e4ji1J1	J:3-100	Alpha-beta plaits	Ribosomal protein S10	Ribosomal protein S10
e4ji1K1	K:11-129	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e4ji1L1	L:5-128	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4ji1M1	M:2-118	HhH/H2TH	H2TH	H2TH
e4ji1N1	N:2-61	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e4ji1O1	O:2-89	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain
e4ji1P1	P:1-83	Ribosomal protein S16	Ribosomal protein S16	Ribosomal protein S16
e4ji1Q1	Q:2-105	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4ji1R1	R:16-88	HTH	HTH	tri-helical
e4ji1S1	S:2-81	Ribosomal protein S19	Ribosomal protein S19	Ribosomal protein S19
e4ji1T1	T:8-106	Spectrin repeat-like	Ribosomal protein S20	Ribosomal protein S20

Structural contacts of domain e4ji1D1 of H-group "Ubiquitin-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4ji1E5	D:X,Y,Z->E:x,y,z	Ribosomal protein S5 domain 2-like	Interaction Interface Pymol
e4ji1H1	D:Y,X,-Z->H:x,y,z	Ribosomal protein S8, N-terminal domain	Interaction Interface Pymol