Domain ID e4ji3D1

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Alpha-L RNA-binding motif
  • F: Ribosomal_S4,S4
UID: 001549942
Type: Automatic domain
Parent: e4v4vAD1
Range: D:2-209
Ligands: MG ZN
PDB: 4ji3
PDB Description: RIBOSOMAL PROTEIN S4
UniProt: P80373
Species:

Structure of domain e4ji3D1

Domains in the same chain:

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e4ji3D1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif

Domains in the same PDB:

e4ji3B1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4ji3C3 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4ji3C4 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4ji3D1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4ji3E6 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4ji3E5 E:73-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4ji3F1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4ji3G1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4ji3H1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4ji3H2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4ji3I1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4ji3J1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4ji3K1 K:11-126 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4ji3L1 L:5-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4ji3M1 M:2-119 HhH/H2TH H2TH H2TH
e4ji3N1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4ji3O1 O:2-88 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4ji3P1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4ji3Q1 Q:2-78 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4ji3R1 R:19-88 HTH HTH tri-helical
e4ji3S1 S:2-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4ji3T1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e4ji3D1 of H-group "Ubiquitin-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4ji3E5 D:X,Y,Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e4ji3E6 D:X,Y,Z->E:x,y,z dsRNA-binding domain-like Interaction Interface Pymol
e4ji3H1 D:Y,X,-Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol
e4ji3C4 D:x,y,z->C:X,Y,Z Ribosomal protein S3-C Interaction Interface Pymol