ECOD: domain e4k7dA1

Domain ID e4k7dA1

A: few secondary structure elements
X: RING/U-box-like
H: RING/U-box-like
T: RING/U-box
F: zf-RING_12

UID:	001624873
Type:	Automatic domain
Parent:	e4k95A1
Range:	A:140-227
Ligands:	MLI ZN
PDB:	4k7d
PDB Description:	E3 ubiquitin-protein ligase parkin
UniProt:	Q9JK66
Hsap BLAST neighbor:	O60260
Species:	Rattus norvegicus

Domain
In chain context
In PDB context

Structure of domain e4k7dA1

Domains in the same chain:

Download Pymol

e4k7dA1	A:140-227	RING/U-box-like	RING/U-box-like	RING/U-box
e4k7dA3	A:228-327	RING/U-box-like	RING/U-box-like	RING/U-box
e4k7dA4	A:328-385	RING/U-box-like	RING/U-box-like	IBR domain
e4k7dA2	A:411-465	RING/U-box-like	RING/U-box-like	Ariadne-1 protein homolog

Domains in the same PDB:

e4k7dA1	A:140-227	RING/U-box-like	RING/U-box-like	RING/U-box
e4k7dA3	A:228-327	RING/U-box-like	RING/U-box-like	RING/U-box
e4k7dA4	A:328-385	RING/U-box-like	RING/U-box-like	IBR domain
e4k7dA2	A:411-465	RING/U-box-like	RING/U-box-like	Ariadne-1 protein homolog
e4k7dB1	B:140-227	RING/U-box-like	RING/U-box-like	RING/U-box
e4k7dB3	B:228-327	RING/U-box-like	RING/U-box-like	RING/U-box
e4k7dB4	B:327-382	RING/U-box-like	RING/U-box-like	IBR domain
e4k7dB2	B:411-465	RING/U-box-like	RING/U-box-like	Ariadne-1 protein homolog
e4k7dC1	C:140-227	RING/U-box-like	RING/U-box-like	RING/U-box
e4k7dC3	C:228-327	RING/U-box-like	RING/U-box-like	RING/U-box
e4k7dC4	C:327-404	RING/U-box-like	RING/U-box-like	IBR domain
e4k7dC2	C:411-465	RING/U-box-like	RING/U-box-like	Ariadne-1 protein homolog

Structural contacts of domain e4k7dA1 of H-group "RING/U-box-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4k7dC2	A:X,Y,Z->C:x,y,z	RING/U-box-like	Interaction Interface Pymol
e4k7dC1	A:X,Y,Z->C:x,y,z	RING/U-box-like	Interaction Interface Pymol
e4k7dB1	A:x,y,z->B:X-1,Y,Z	RING/U-box-like	Interaction Interface Pymol