| UID: | 001624871 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1wd2A1 |
| Range: | B:411-465 |
| Ligands: | ZN |
| PDB: | 4k7d |
| PDB Description: | E3 ubiquitin-protein ligase parkin |
| UniProt: | Q9JK66 |
| Hsap BLAST neighbor: | O60260 |
| Species: | Rattus norvegicus |
Structure of domain e4k7dB2
Domains in the same chain:
| e4k7dB1 | B:140-227 | RING/U-box-like | RING/U-box-like | RING/U-box |
| e4k7dB3 | B:228-327 | RING/U-box-like | RING/U-box-like | RING/U-box |
| e4k7dB4 | B:327-382 | RING/U-box-like | RING/U-box-like | IBR domain |
| e4k7dB2 | B:411-465 | RING/U-box-like | RING/U-box-like | Ariadne-1 protein homolog |
Domains in the same PDB:
| e4k7dA1 | A:140-227 | RING/U-box-like | RING/U-box-like | RING/U-box |
| e4k7dA3 | A:228-327 | RING/U-box-like | RING/U-box-like | RING/U-box |
| e4k7dA4 | A:328-385 | RING/U-box-like | RING/U-box-like | IBR domain |
| e4k7dA2 | A:411-465 | RING/U-box-like | RING/U-box-like | Ariadne-1 protein homolog |
| e4k7dB1 | B:140-227 | RING/U-box-like | RING/U-box-like | RING/U-box |
| e4k7dB3 | B:228-327 | RING/U-box-like | RING/U-box-like | RING/U-box |
| e4k7dB4 | B:327-382 | RING/U-box-like | RING/U-box-like | IBR domain |
| e4k7dB2 | B:411-465 | RING/U-box-like | RING/U-box-like | Ariadne-1 protein homolog |
| e4k7dC1 | C:140-227 | RING/U-box-like | RING/U-box-like | RING/U-box |
| e4k7dC3 | C:228-327 | RING/U-box-like | RING/U-box-like | RING/U-box |
| e4k7dC4 | C:327-404 | RING/U-box-like | RING/U-box-like | IBR domain |
| e4k7dC2 | C:411-465 | RING/U-box-like | RING/U-box-like | Ariadne-1 protein homolog |
Structural contacts of domain e4k7dB2 of H-group "RING/U-box-like":
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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e4k7dC1 | B:X-1,Y,Z->C:x,y,z | RING/U-box-like | Interaction Interface Pymol |
| e4k7dC4 | B:X-1,Y,Z->C:x,y,z | RING/U-box-like | Interaction Interface Pymol |
| e4k7dC4 | B:X-1,Y,Z->C:x,y,z | RING/U-box-like | Interaction Interface Pymol |
| e4k7dA4 | B:x,y,z->A:-X+3/2,-Y+1,Z-1/2 | RING/U-box-like | Interaction Interface Pymol |
| e4k7dA4 | B:x,y,z->A:-X+3/2,-Y+1,Z-1/2 | RING/U-box-like | Interaction Interface Pymol |
