Domain ID e4k8xA3

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  • A: alpha bundles
  • X: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • H: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • T: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • F: DNA_pol_B
UID: 001064426
Type: Automatic domain
Parent: e1tgoA2
Range: A:447-500
Ligands: 5CY SO4
PDB: 4k8x
PDB Description: DNA POLYMERASE
UniProt: Q56366
Hsap BLAST neighbor: P28340
Species: Thermococcus sp. 9oN-7

Structure of domain e4k8xA3

Domains in the same chain:

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e4k8xA1 A:1-33,A:114-132 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4k8xA5 A:34-113 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4k8xA6 A:133-346 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4k8xA4 A:347-446,A:501-609 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4k8xA3 A:447-500 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4k8xA2 A:610-759 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e4k8xA1 A:1-33,A:114-132 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4k8xA5 A:34-113 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4k8xA6 A:133-346 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4k8xA4 A:347-446,A:501-609 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4k8xA3 A:447-500 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4k8xA2 A:610-759 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e4k8xA3 of H-group ""fingers" domain in bacteriophage RB69-like DNA polymerase I":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4k8xA6 A:X-1/2,-Y+1/2,-Z->A:x,y,z Ribonuclease H-like Interaction Interface Pymol
e4k8xA5 A:X,Y,Z-1->A:x,y,z Family B DNA polymerase insertion domain Interaction Interface Pymol