Domain ID e4k8xA5

Download files:
  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Family B DNA polymerase insertion domain
  • T: Family B DNA polymerase insertion domain
  • F: Unmapped domains
UID: 001064428
Type: Automatic domain
Parent: e1tgoA5
Range: A:34-113
Ligands: CL SO4
PDB: 4k8x
PDB Description: DNA POLYMERASE
UniProt: Q56366
Species: Thermococcus sp. 9oN-7

Structure of domain e4k8xA5

Domains in the same chain:

Download Pymol

e4k8xA1 A:1-33,A:114-132 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4k8xA5 A:34-113 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4k8xA6 A:133-346 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4k8xA4 A:347-446,A:501-609 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4k8xA3 A:447-500 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4k8xA2 A:610-759 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e4k8xA1 A:1-33,A:114-132 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4k8xA5 A:34-113 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e4k8xA6 A:133-346 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4k8xA4 A:347-446,A:501-609 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4k8xA3 A:447-500 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e4k8xA2 A:610-759 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e4k8xA5 of H-group "Family B DNA polymerase insertion domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4k8xA6 A:X-1/2,-Y+1/2,-Z-1->A:x,y,z Ribonuclease H-like Interaction Interface Pymol
e4k8xA3 A:x,y,z->A:X,Y,Z-1 "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e4k8xA6 A:x,y,z->A:X,Y,Z-1 Ribonuclease H-like Interaction Interface Pymol