Domain ID e4k9oD3

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  • A: a/b three-layered sandwiches
  • X: Thiamin diphosphate-binding fold (THDP-binding)
  • H: Thiamin diphosphate-binding fold (THDP-binding)
  • T: Thiamin diphosphate-binding fold (THDP-binding)
  • F: TPP_enzyme_N
UID: 001013026
Type: Automatic domain
Parent: e1pvdA2
Range: D:2-181
Ligands: GOL MG TPP
PDB: 4k9o
PDB Description: BENZOYLFORMATE DECARBOXYLASE
UniProt: P20906
Species: Pseudomonas putida

Structure of domain e4k9oD3

Domains in the same chain:

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e4k9oD3 D:2-181 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e4k9oD1 D:182-341 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e4k9oD2 D:342-525 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)

Domains in the same PDB:

e4k9oA2 A:2-181 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e4k9oA1 A:182-341 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e4k9oA3 A:342-526 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e4k9oB3 B:2-181 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e4k9oB1 B:182-341 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e4k9oB2 B:342-526 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e4k9oC3 C:2-181 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e4k9oC1 C:182-341 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e4k9oC2 C:342-525 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e4k9oD3 D:2-181 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e4k9oD1 D:182-341 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e4k9oD2 D:342-525 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)

Structural contacts of domain e4k9oD3 of H-group "Thiamin diphosphate-binding fold (THDP-binding)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4k9oB2 D:x,y,z->B:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e4k9oB3 D:x,y,z->B:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e4k9oB1 D:x,y,z->B:X,Y,Z Rossmann-related Interaction Interface Pymol
e4k9oC1 D:x,y,z->C:X,Y,Z Rossmann-related Interaction Interface Pymol
e4k9oA2 D:x,y,z->A:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e4k9oB3 D:x,y,z->B:X-1,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol