Domain ID e4kbuF1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L4
  • H: Ribosomal protein L4
  • T: Ribosomal protein L4
  • F: Ribosomal_L4
UID: 001065011
Type: Automatic domain
Parent: e1dmgA1
Range: F:1-208
PDB: 4kbu
PDB Description:
Hsap BLAST neighbor: Q9BYD3
Species:

Structure of domain e4kbuF1

Domains in the same chain:

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e4kbuF1 F:1-208 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4

Domains in the same PDB:

e4kbu01 0:2-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e4kbu11 1:3-95 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e4kbu21 2:2-72 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e4kbu31 3:1-60 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e4kbu41 4:1-35 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e4kbu51 5:2-60 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4kbu71 7:1-49 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e4kbu81 8:2-65 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e4kbu91 9:1-37 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e4kbuC4 C:2-68,C:161-229 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e4kbuC3 C:69-160 Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1
e4kbuD1 D:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kbuD2 D:127-276 SH3 SH3 SH3
e4kbuF1 F:1-208 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e4kbuG1 G:2-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e4kbuH1 H:12-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e4kbuH2 H:83-178 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e4kbuK2 K:2-69 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e4kbuK1 K:70-141 HTH HTH Ribosomal protein L11, C-terminal domain
e4kbuN1 N:1-138 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e4kbuO1 O:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e4kbuR1 R:2-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e4kbuU1 U:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e4kbuV1 V:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e4kbuW1 W:1-113 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e4kbuX1 X:3-95 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e4kbuY1 Y:2-108 SH3 SH3 SH3
e4kbuZ1 Z:3-92 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e4kbuZ2 Z:93-187 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related

Structural contacts of domain e4kbuF1 of H-group "Ribosomal protein L4":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1dmgA1 F:X,Y,Z->P:x,y,z Ribosomal protein L4 Interaction Interface Pymol
e4kbuU1 F:X,Y,Z->U:x,y,z Ribosomal protein L20 Interaction Interface Pymol