Domain ID e4kcyR1

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  • A: alpha arrays
  • X: HTH
  • H: HTH
  • T: tri-helical
  • F: Ribosomal_S18
UID: 001065124
Type: Automatic domain
Parent: e2uubR1
Range: R:19-88
PDB: 4kcy
PDB Description:
Hsap BLAST neighbor: Q9Y3D5
Species:

Structure of domain e4kcyR1

Domains in the same chain:

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e4kcyR1 R:19-88 HTH HTH tri-helical

Domains in the same PDB:

e4kcyC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4kcyC1 C:107-208 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4kcyE2 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4kcyE1 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kcyF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4kcyG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4kcyH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4kcyH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4kcyJ1 J:3-101 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4kcyK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4kcyL1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kcyN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4kcyO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4kcyP1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4kcyR1 R:19-88 HTH HTH tri-helical
e4kcyT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e4kcyY6 Y:4-284 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kcyY7 Y:283-403 cradle loop barrel RIFT-related Alanine racemase-C
e4kcyY9 Y:404-482 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like
e4kcyY8 Y:483-599 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kcyY10 Y:600-690 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like

Structural contacts of domain e4kcyR1 of H-group "HTH":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4kcyF1 R:x,y,z->F:X,Y,Z Ribosomal protein S6 Interaction Interface Pymol
e4kcyK1 R:x,y,z->K:X,Y,Z Ribonuclease H-like Interaction Interface Pymol