Domain ID e4kd8N1

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  • A: few secondary structure elements
  • X: Glucocorticoid receptor-like
  • H: LIM domain-like
  • T: LIM domain-like
  • F: Ribosomal_S14
UID: 001065246
Type: Automatic domain
Parent: e2uubN1
Range: N:2-61
PDB: 4kd8
PDB Description:
Species:

Structure of domain e4kd8N1

Domains in the same chain:

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e4kd8N1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like

Domains in the same PDB:

e4kd8C2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4kd8C1 C:107-208 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4kd8E2 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4kd8E1 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kd8F1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4kd8G1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4kd8H1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4kd8H2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4kd8J1 J:3-101 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4kd8K1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4kd8L1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kd8N1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4kd8O1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4kd8P1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4kd8R1 R:19-88 HTH HTH tri-helical
e4kd8T1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e4kd8Y9 Y:4-38,Y:67-284 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kd8Y7 Y:285-401 cradle loop barrel RIFT-related Alanine racemase-C
e4kd8Y8 Y:402-475 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like
e4kd8Y10 Y:476-585 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kd8Y6 Y:586-690 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like

Structural contacts of domain e4kd8N1 of H-group "LIM domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4kd8C2 N:x,y,z->C:X,Y,Z KH-domains Interaction Interface Pymol
e4kd8J1 N:x,y,z->J:X,Y,Z Ribosomal protein S10 Interaction Interface Pymol