Domain ID e4kdaH1

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  • A: a+b two layers
  • X: R3H domain-like
  • H: Ribosomal protein S8, N-terminal domain
  • T: Ribosomal protein S8, N-terminal domain
  • F: Ribosomal_S8
UID: 001065302
Type: Automatic domain
Parent: e1seiA1
Range: H:1-66
PDB: 4kda
PDB Description:
Species:

Structure of domain e4kdaH1

Domains in the same chain:

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e4kdaH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4kdaH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain

Domains in the same PDB:

e4kdaC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4kdaC1 C:107-208 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4kdaE2 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4kdaE1 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kdaF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4kdaG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4kdaH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4kdaH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4kdaJ1 J:3-101 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4kdaK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4kdaL1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kdaN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4kdaO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4kdaP1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4kdaR1 R:19-88 HTH HTH tri-helical
e4kdaT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e4kdaY9 Y:4-38,Y:67-284 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kdaY7 Y:285-401 cradle loop barrel RIFT-related Alanine racemase-C
e4kdaY8 Y:402-475 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like
e4kdaY10 Y:476-585 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kdaY6 Y:586-690 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like

Structural contacts of domain e4kdaH1 of H-group "Ribosomal protein S8, N-terminal domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4kdaE1 H:x,y,z->E:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol