Domain ID e4kdbF1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L4
  • H: Ribosomal protein L4
  • T: Ribosomal protein L4
  • F: Ribosomal_L4
UID: 001065326
Type: Automatic domain
Parent: e1dmgA1
Range: F:1-208
PDB: 4kdb
PDB Description:
Hsap BLAST neighbor: Q9BYD3
Species:

Structure of domain e4kdbF1

Domains in the same chain:

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e4kdbF1 F:1-208 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4

Domains in the same PDB:

e4kdb01 0:2-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e4kdb11 1:3-95 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e4kdb21 2:2-72 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e4kdb31 3:1-60 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e4kdb41 4:1-35 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e4kdb51 5:2-60 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4kdb71 7:1-49 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e4kdb81 8:2-65 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e4kdb91 9:1-37 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e4kdbC4 C:2-68,C:161-229 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e4kdbC3 C:69-160 Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1
e4kdbD1 D:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kdbD2 D:127-276 SH3 SH3 SH3
e4kdbe1 e:59-122 ClpS-like ClpS-related ClpS-related
e4kdbF1 F:1-208 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e4kdbG1 G:2-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e4kdbH1 H:12-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e4kdbH2 H:83-178 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e4kdbK2 K:2-69 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e4kdbK1 K:70-141 HTH HTH Ribosomal protein L11, C-terminal domain
e4kdbN1 N:1-138 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e4kdbO1 O:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e4kdbR1 R:2-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e4kdbU1 U:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e4kdbV1 V:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e4kdbW1 W:1-113 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e4kdbX1 X:3-95 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e4kdbY1 Y:2-108 SH3 SH3 SH3
e4kdbZ1 Z:3-92 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e4kdbZ2 Z:93-187 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related

Structural contacts of domain e4kdbF1 of H-group "Ribosomal protein L4":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1dmgA1 F:X,Y,Z->P:x,y,z Ribosomal protein L4 Interaction Interface Pymol