Domain ID e4kdgR1

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  • A: alpha arrays
  • X: HTH
  • H: HTH
  • T: tri-helical
  • F: Ribosomal_S18
UID: 001065376
Type: Automatic domain
Parent: e2uubR1
Range: R:19-88
PDB: 4kdg
PDB Description:
Hsap BLAST neighbor: Q9Y3D5
Species:

Structure of domain e4kdgR1

Domains in the same chain:

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e4kdgR1 R:19-88 HTH HTH tri-helical

Domains in the same PDB:

e4kdgC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4kdgC1 C:107-208 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4kdgE2 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4kdgE1 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kdgF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4kdgG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4kdgH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4kdgH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4kdgJ1 J:3-101 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4kdgK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4kdgL1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kdgN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4kdgO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4kdgP1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4kdgR1 R:19-88 HTH HTH tri-helical
e4kdgT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e4kdgY9 Y:4-38,Y:67-284 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kdgY7 Y:285-401 cradle loop barrel RIFT-related Alanine racemase-C
e4kdgY8 Y:402-475 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like
e4kdgY10 Y:476-585 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kdgY6 Y:586-690 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like

Structural contacts of domain e4kdgR1 of H-group "HTH":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4kdgF1 R:x,y,z->F:X,Y,Z Ribosomal protein S6 Interaction Interface Pymol
e4kdgK1 R:x,y,z->K:X,Y,Z Ribonuclease H-like Interaction Interface Pymol