Domain ID e4kdh51

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: Ribosomal_L32p
UID: 001065412
Type: Automatic domain
Parent: e2j0151
Range: 5:2-60
PDB: 4kdh
PDB Description:
Species:

Structure of domain e4kdh51

Domains in the same chain:

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e4kdh51 5:2-60 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e4kdh01 0:2-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e4kdh11 1:3-95 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e4kdh21 2:2-72 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e4kdh31 3:1-60 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e4kdh41 4:1-35 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e4kdh51 5:2-60 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4kdh71 7:1-49 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e4kdh81 8:2-65 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e4kdh91 9:1-37 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e4kdhC4 C:2-68,C:161-229 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e4kdhC3 C:69-160 Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1
e4kdhD1 D:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kdhD2 D:127-276 SH3 SH3 SH3
e4kdhe1 e:59-122 ClpS-like ClpS-related ClpS-related
e4kdhF1 F:1-208 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e4kdhG1 G:2-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e4kdhH1 H:12-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e4kdhH2 H:83-178 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e4kdhK2 K:2-69 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e4kdhK1 K:70-141 HTH HTH Ribosomal protein L11, C-terminal domain
e4kdhN1 N:1-138 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e4kdhO1 O:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e4kdhR1 R:2-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e4kdhU1 U:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e4kdhV1 V:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e4kdhW1 W:1-113 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e4kdhX1 X:3-95 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e4kdhY1 Y:2-108 SH3 SH3 SH3
e4kdhZ1 Z:3-92 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e4kdhZ2 Z:93-187 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related

Structural contacts of domain e4kdh51 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4kdhW1 5:x,y,z->W:X,Y,Z Ribosomal protein L22 Interaction Interface Pymol
e4kdhR1 5:x,y,z->R:X,Y,Z Prokaryotic ribosomal protein L17 Interaction Interface Pymol
e4kdhU1 5:x,y,z->U:X,Y,Z Ribosomal protein L20 Interaction Interface Pymol