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RIMD
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Summary
Structure view
Domain organization
Domain ID e4kdjY7
Download files:
FASTA
Coordinates
Conservation
Pymol
domain only
in chain
in PDB
SNVs
A: beta barrels
X: cradle loop barrel
H: RIFT-related
T: Alanine racemase-C
F: GTP_EFTU_D2
UID:
001231443
Type:
Automatic
domain
Parent:
e1n0uA1
Range:
Y:285-401
PDB:
4kdj
PDB Description:
Hsap BLAST neighbor:
Q96RP9
Species:
Domain
In chain context
In PDB context
Structure of domain e4kdjY7
Domains in the same chain:
Download Pymol
e4kdjY9
Y:4-38,Y:67-284
P-loop domains-like
P-loop domains-related
P-loop containing nucleoside triphosphate hydrolases
e4kdjY7
Y:285-401
cradle loop barrel
RIFT-related
Alanine racemase-C
e4kdjY8
Y:402-475
Alpha-beta plaits
EF-G C-terminal domain-like
EF-G C-terminal domain-like
e4kdjY10
Y:476-585
Ribosomal protein S5 domain 2-like
Ribosomal protein S5 domain 2-like
Ribosomal protein S5 domain 2-like
e4kdjY6
Y:586-690
Alpha-beta plaits
EF-G C-terminal domain-like
EF-G C-terminal domain-like
Domains in the same PDB:
e4kdjC2
C:2-106
Alpha-lytic protease prodomain-like
KH-domains
Prokaryotic type KH domain (KH-domain type II)
e4kdjC1
C:107-208
T-fold
Ribosomal protein S3-C
Ribosomal protein S3-C
e4kdjE2
E:5-73
dsRBD-like
dsRNA-binding domain-like
dsRNA-binding domain-like
e4kdjE1
E:74-155
Ribosomal protein S5 domain 2-like
Ribosomal protein S5 domain 2-like
Ribosomal protein S5 domain 2-like
e4kdjF1
F:1-101
Alpha-beta plaits
Ribosomal protein S6
Ribosomal protein S6
e4kdjG1
G:2-156
Ribosomal protein S7
Ribosomal protein S7
Ribosomal protein S7
e4kdjH1
H:1-66
R3H domain-like
Ribosomal protein S8, N-terminal domain
Ribosomal protein S8, N-terminal domain
e4kdjH2
H:67-138
Ribosomal protein S8, C-terminal domain
Ribosomal protein S8, C-terminal domain
Ribosomal protein S8, C-terminal domain
e4kdjJ1
J:3-101
Alpha-beta plaits
Ribosomal protein S10
Ribosomal protein S10
e4kdjK1
K:11-129
Ribonuclease H-like
Ribonuclease H-like
Ribonuclease H-like
e4kdjL1
L:5-129
OB-fold
Nucleic acid-binding proteins
Nucleic acid-binding proteins
e4kdjN1
N:2-61
Glucocorticoid receptor-like
LIM domain-like
LIM domain-like
e4kdjO1
O:2-89
S15/NS1 RNA-binding domain
S15/NS1 RNA-binding domain
S15/NS1 RNA-binding domain
e4kdjP1
P:1-84
Ribosomal protein S16
Ribosomal protein S16
Ribosomal protein S16
e4kdjR1
R:19-88
HTH
HTH
tri-helical
e4kdjT1
T:8-106
Spectrin repeat-like
Ribosomal protein S20
Ribosomal protein S20
e4kdjY9
Y:4-38,Y:67-284
P-loop domains-like
P-loop domains-related
P-loop containing nucleoside triphosphate hydrolases
e4kdjY7
Y:285-401
cradle loop barrel
RIFT-related
Alanine racemase-C
e4kdjY8
Y:402-475
Alpha-beta plaits
EF-G C-terminal domain-like
EF-G C-terminal domain-like
e4kdjY10
Y:476-585
Ribosomal protein S5 domain 2-like
Ribosomal protein S5 domain 2-like
Ribosomal protein S5 domain 2-like
e4kdjY6
Y:586-690
Alpha-beta plaits
EF-G C-terminal domain-like
EF-G C-terminal domain-like