Domain ID e4kfhK1

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: Ribosomal_S11
UID: 001065505
Type: Automatic domain
Parent: e2uubK1
Range: K:11-124
Ligands: MG
PDB: 4kfh
PDB Description:
Hsap BLAST neighbor: P82912
Species:

Structure of domain e4kfhK1

Domains in the same chain:

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e4kfhK1 K:11-124 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e4kfhC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4kfhC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4kfhE2 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4kfhE1 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kfhF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4kfhG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4kfhH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4kfhH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4kfhJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4kfhK1 K:11-124 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4kfhL1 L:4-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kfhN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4kfhO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4kfhP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4kfhR1 R:19-88 HTH HTH tri-helical
e4kfhT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e4kfhY12 Y:17-123 Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain
e4kfhY9 Y:124-226 Alpha-beta plaits Ferredoxin-like domain in release factor Ferredoxin-like domain in release factor
e4kfhY10 Y:227-314 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like
e4kfhY11 Y:315-378 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like

Structural contacts of domain e4kfhK1 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4kfhR1 K:X,Y,Z->R:x,y,z HTH Interaction Interface Pymol
e4kfhG1 K:x,y,z->G:X,Y,Z Ribosomal protein S7 Interaction Interface Pymol