Domain ID e4kfkH1

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  • A: a+b two layers
  • X: R3H domain-like
  • H: Ribosomal protein S8, N-terminal domain
  • T: Ribosomal protein S8, N-terminal domain
  • F: Ribosomal_S8
UID: 001065561
Type: Automatic domain
Parent: e1seiA1
Range: H:1-66
Ligands: MG
PDB: 4kfk
PDB Description:
Species:

Structure of domain e4kfkH1

Domains in the same chain:

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e4kfkH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4kfkH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain

Domains in the same PDB:

e4kfkC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4kfkC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4kfkE2 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4kfkE1 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kfkF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4kfkG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4kfkH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4kfkH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4kfkJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4kfkK1 K:11-124 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4kfkL1 L:4-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kfkN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4kfkO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4kfkP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4kfkR1 R:19-88 HTH HTH tri-helical
e4kfkT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e4kfkY8 Y:17-123 Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain Release factor (Pfam 00472) N-terminal alpha helical domain
e4kfkY5 Y:124-226 Alpha-beta plaits Ferredoxin-like domain in release factor Ferredoxin-like domain in release factor
e4kfkY6 Y:227-314 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like
e4kfkY7 Y:315-378 dsRBD-like Peptidyl-tRNA hydrolase domain-like Peptidyl-tRNA hydrolase domain-like

Structural contacts of domain e4kfkH1 of H-group "Ribosomal protein S8, N-terminal domain":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4kfkE1 H:x,y,z->E:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol