Domain ID e4khpE2

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Ribosomal_S5_C
UID: 001017023
Type: Automatic domain
Parent: e1pkpA2
Range: E:74-154
Ligands: MG
PDB: 4khp
PDB Description: 30S Ribosomal protein S5
UniProt: Q5SHQ5
Species:

Structure of domain e4khpE2

Domains in the same chain:

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e4khpE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4khpE2 E:74-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e4khpB1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4khpC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4khpC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4khpD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4khpE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4khpE2 E:74-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4khpF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4khpG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4khpH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4khpH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4khpI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4khpJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4khpK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4khpL1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4khpM1 M:2-121 HhH/H2TH H2TH H2TH
e4khpN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4khpO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4khpP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4khpQ1 Q:2-78 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4khpR1 R:19-88 HTH HTH tri-helical
e4khpS1 S:4-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4khpT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e4khpE2 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4khpH2 E:X,Y,Z->H:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol
e4khpH1 E:X,Y,Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol
e4khpD1 E:x,y,z->D:X,Y,Z Ubiquitin-related Interaction Interface Pymol
e4khpE1 E:x,y,z->E:Y,X,-Z dsRNA-binding domain-like Interaction Interface Pymol
e4khpE1 E:Y,X,-Z->E:x,y,z dsRNA-binding domain-like Interaction Interface Pymol