Domain ID e4kj0L1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosom_S12_S23
UID: 001067124
Type: Automatic domain
Parent: e2uubL1
Range: L:2-124
Ligands: MG
PDB: 4kj0
PDB Description:
Hsap BLAST neighbor: O15235
Species:

Structure of domain e4kj0L1

Domains in the same chain:

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e4kj0L1 L:2-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e4kj0C2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4kj0C1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4kj0E2 E:10-77 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4kj0E1 E:78-159 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kj0F1 F:1-100 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4kj0G1 G:2-152 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4kj0H1 H:2-64 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4kj0H2 H:65-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4kj0J1 J:5-102 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4kj0K1 K:13-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4kj0L1 L:2-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kj0N1 N:2-101 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4kj0O1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4kj0P1 P:1-82 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4kj0R1 R:20-74 HTH HTH tri-helical
e4kj0T1 T:3-87 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e4kj0U1 U:4-54 30S ribosomal protein S21 30S ribosomal protein S21 30S ribosomal protein S21
e4kj0V5 V:2-290 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kj0V7 V:289-411 cradle loop barrel RIFT-related Alanine racemase-C
e4kj0V8 V:412-489 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like
e4kj0V6 V:490-610 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kj0V9 V:611-700 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like

Structural contacts of domain e4kj0L1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4kj0V8 L:X,Y,Z->V:x,y,z EF-G C-terminal domain-like Interaction Interface Pymol
e4kj0H2 L:x,y,z->H:X,Y,Z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol