Domain ID e4kj6E1

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Ribosomal_S5_C
UID: 001067288
Type: Automatic domain
Parent: e1pkpA2
Range: E:78-159
Ligands: MG
PDB: 4kj6
PDB Description:
Species:

Structure of domain e4kj6E1

Domains in the same chain:

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e4kj6E2 E:10-77 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4kj6E1 E:78-159 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e4kj6C2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4kj6C1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4kj6E2 E:10-77 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4kj6E1 E:78-159 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kj6F1 F:1-100 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4kj6G1 G:2-152 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4kj6H1 H:2-64 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4kj6H2 H:65-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4kj6J1 J:5-102 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4kj6K1 K:13-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4kj6L1 L:2-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kj6N1 N:2-101 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4kj6O1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4kj6P1 P:1-82 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4kj6R1 R:20-74 HTH HTH tri-helical
e4kj6T1 T:3-87 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e4kj6U1 U:4-54 30S ribosomal protein S21 30S ribosomal protein S21 30S ribosomal protein S21
e4kj6V9 V:2-290 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kj6V11 V:289-411 cradle loop barrel RIFT-related Alanine racemase-C
e4kj6V12 V:412-489 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like
e4kj6V10 V:490-610 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kj6V2 V:611-700 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like

Structural contacts of domain e4kj6E1 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4kj6H1 E:X,Y,Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol
e4kj6H2 E:X,Y,Z->H:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol