Domain ID e4kjaL1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosom_S12_S23
UID: 001067412
Type: Automatic domain
Parent: e2uubL1
Range: L:2-124
PDB: 4kja
PDB Description:
Hsap BLAST neighbor: O15235
Species:

Structure of domain e4kjaL1

Domains in the same chain:

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e4kjaL1 L:2-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e4kjaC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4kjaC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4kjaE2 E:10-77 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4kjaE1 E:78-159 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kjaF1 F:1-100 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4kjaG1 G:2-152 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4kjaH1 H:2-64 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4kjaH2 H:65-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4kjaJ1 J:5-102 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4kjaK1 K:13-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4kjaL1 L:2-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kjaN1 N:2-101 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4kjaO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4kjaP1 P:1-82 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4kjaR1 R:20-74 HTH HTH tri-helical
e4kjaT1 T:3-87 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e4kjaU1 U:4-54 30S ribosomal protein S21 30S ribosomal protein S21 30S ribosomal protein S21
e4kjaV9 V:2-290 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kjaV11 V:289-411 cradle loop barrel RIFT-related Alanine racemase-C
e4kjaV12 V:412-489 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like
e4kjaV10 V:490-610 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kjaV2 V:611-700 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like

Structural contacts of domain e4kjaL1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4kjaV11 L:X,Y,Z->V:x,y,z RIFT-related Interaction Interface Pymol
e4kjaV12 L:X,Y,Z->V:x,y,z EF-G C-terminal domain-like Interaction Interface Pymol
e4kjaH2 L:x,y,z->H:X,Y,Z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol