Domain ID e4kkoA3

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: RNase_H
UID: 001096791
Type: Automatic domain
Parent: e1mu2A3
Range: A:429-552
PDB: 4kko
PDB Description: HIV-1 reverse transcriptase, p66 subunit
UniProt: P03366
Hsap BLAST neighbor: P10266
Species:

Structure of domain e4kkoA3

Domains in the same chain:

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e4kkoA7 A:-1-239 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4kkoA6 A:240-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e4kkoA5 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e4kkoA3 A:429-552 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e4kkoA7 A:-1-239 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4kkoA6 A:240-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e4kkoA5 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e4kkoA3 A:429-552 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4kkoB2 B:5-234 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e4kkoB1 B:235-308 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e4kkoB3 B:309-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e4kkoA3 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4kkoB1 A:X,Y,Z->B:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e4kkoB3 A:X,Y,Z->B:x,y,z RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e4kkoA3 A:x,y,z->A:-X,Y,-Z+2 Ribonuclease H-like Interaction Interface Pymol
e4kkoA3 A:-X,Y,-Z+2->A:x,y,z Ribonuclease H-like Interaction Interface Pymol
e4kkoA7 A:-X+1/2,Y-1/2,-Z+3->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e4kkoB2 A:x,y,z->B:-X+1/2,Y-1/2,-Z+2 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol