Domain ID e4kodF3

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  • A: a+b two layers
  • X: Cdc48 domain 2-like
  • H: Cdc48 domain 2-like
  • T: Cdc48 domain 2-like
  • F: CDC48_2
UID: 001111112
Type: Automatic domain
Parent: e1cr5A2
Range: F:107-200
PDB: 4kod
PDB Description: Transitional endoplasmic reticulum ATPase
UniProt: P55072
Hsap BLAST neighbor: P55072
Species: Homo sapiens

Structure of domain e4kodF3

Domains in the same chain:

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e4kodF1 F:23-106 cradle loop barrel RIFT-related double psi
e4kodF3 F:107-200 Cdc48 domain 2-like Cdc48 domain 2-like Cdc48 domain 2-like
e4kodF9 F:201-371 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kodF10 F:372-460 Histone-like Histone-related AAA+ ATPase lid domain

Domains in the same PDB:

e4kodA1 A:22-106 cradle loop barrel RIFT-related double psi
e4kodA3 A:107-200 Cdc48 domain 2-like Cdc48 domain 2-like Cdc48 domain 2-like
e4kodA9 A:201-371 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kodA10 A:372-459 Histone-like Histone-related AAA+ ATPase lid domain
e4kodB1 B:21-106 cradle loop barrel RIFT-related double psi
e4kodB3 B:107-200 Cdc48 domain 2-like Cdc48 domain 2-like Cdc48 domain 2-like
e4kodB9 B:201-371 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kodB10 B:372-459 Histone-like Histone-related AAA+ ATPase lid domain
e4kodC1 C:23-106 cradle loop barrel RIFT-related double psi
e4kodC3 C:107-200 Cdc48 domain 2-like Cdc48 domain 2-like Cdc48 domain 2-like
e4kodC9 C:201-371 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kodC10 C:372-460 Histone-like Histone-related AAA+ ATPase lid domain
e4kodD1 D:22-106 cradle loop barrel RIFT-related double psi
e4kodD3 D:107-200 Cdc48 domain 2-like Cdc48 domain 2-like Cdc48 domain 2-like
e4kodD9 D:201-371 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kodD10 D:372-460 Histone-like Histone-related AAA+ ATPase lid domain
e4kodE1 E:23-106 cradle loop barrel RIFT-related double psi
e4kodE3 E:107-200 Cdc48 domain 2-like Cdc48 domain 2-like Cdc48 domain 2-like
e4kodE9 E:201-371 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kodE10 E:372-461 Histone-like Histone-related AAA+ ATPase lid domain
e4kodF1 F:23-106 cradle loop barrel RIFT-related double psi
e4kodF3 F:107-200 Cdc48 domain 2-like Cdc48 domain 2-like Cdc48 domain 2-like
e4kodF9 F:201-371 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kodF10 F:372-460 Histone-like Histone-related AAA+ ATPase lid domain
e4kodG1 G:23-106 cradle loop barrel RIFT-related double psi
e4kodG3 G:107-200 Cdc48 domain 2-like Cdc48 domain 2-like Cdc48 domain 2-like
e4kodG9 G:201-371 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kodG10 G:372-459 Histone-like Histone-related AAA+ ATPase lid domain
e4kodH1 H:22-106 cradle loop barrel RIFT-related double psi
e4kodH3 H:107-200 Cdc48 domain 2-like Cdc48 domain 2-like Cdc48 domain 2-like
e4kodH9 H:201-371 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kodH10 H:372-459 Histone-like Histone-related AAA+ ATPase lid domain
e4kodI1 I:20-106 cradle loop barrel RIFT-related double psi
e4kodI3 I:107-200 Cdc48 domain 2-like Cdc48 domain 2-like Cdc48 domain 2-like
e4kodI9 I:201-371 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kodI10 I:372-459 Histone-like Histone-related AAA+ ATPase lid domain
e4kodJ1 J:18-106 cradle loop barrel RIFT-related double psi
e4kodJ3 J:107-200 Cdc48 domain 2-like Cdc48 domain 2-like Cdc48 domain 2-like
e4kodJ9 J:201-371 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kodJ10 J:372-462 Histone-like Histone-related AAA+ ATPase lid domain
e4kodK1 K:23-106 cradle loop barrel RIFT-related double psi
e4kodK3 K:107-200 Cdc48 domain 2-like Cdc48 domain 2-like Cdc48 domain 2-like
e4kodK9 K:201-371 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kodK10 K:372-460 Histone-like Histone-related AAA+ ATPase lid domain
e4kodL1 L:18-106 cradle loop barrel RIFT-related double psi
e4kodL3 L:107-200 Cdc48 domain 2-like Cdc48 domain 2-like Cdc48 domain 2-like
e4kodL9 L:201-371 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kodL10 L:372-459 Histone-like Histone-related AAA+ ATPase lid domain

Structural contacts of domain e4kodF3 of H-group "Cdc48 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4kodA9 F:x,y,z->A:X,Y,Z P-loop domains-related Interaction Interface Pymol
e4kodJ1 F:X-1/2,-Y+1/2,-Z->J:x,y,z RIFT-related Interaction Interface Pymol
e4kodB3 F:X-1/2,-Y+1/2,-Z->B:x,y,z Cdc48 domain 2-like Interaction Interface Pymol