ECOD: domain e4kodG9

Domain ID e4kodG9

A: a/b three-layered sandwiches
X: P-loop domains-like
H: P-loop domains-related
T: P-loop containing nucleoside triphosphate hydrolases
F: AAA

UID:	001232853
Type:	Automatic domain
Parent:	e1lv7A2
Range:	G:201-371
Ligands:	ADP
PDB:	4kod
PDB Description:	Transitional endoplasmic reticulum ATPase
UniProt:	P55072
Hsap BLAST neighbor:	P55072
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e4kodG1	G:23-106	cradle loop barrel	RIFT-related	double psi
e4kodG3	G:107-200	Cdc48 domain 2-like	Cdc48 domain 2-like	Cdc48 domain 2-like
e4kodG9	G:201-371	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4kodG10	G:372-459	Histone-like	Histone-related	AAA+ ATPase lid domain

Domains in the same PDB:

e4kodA1	A:22-106	cradle loop barrel	RIFT-related	double psi
e4kodA3	A:107-200	Cdc48 domain 2-like	Cdc48 domain 2-like	Cdc48 domain 2-like
e4kodA9	A:201-371	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4kodA10	A:372-459	Histone-like	Histone-related	AAA+ ATPase lid domain
e4kodB1	B:21-106	cradle loop barrel	RIFT-related	double psi
e4kodB3	B:107-200	Cdc48 domain 2-like	Cdc48 domain 2-like	Cdc48 domain 2-like
e4kodB9	B:201-371	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4kodB10	B:372-459	Histone-like	Histone-related	AAA+ ATPase lid domain
e4kodC1	C:23-106	cradle loop barrel	RIFT-related	double psi
e4kodC3	C:107-200	Cdc48 domain 2-like	Cdc48 domain 2-like	Cdc48 domain 2-like
e4kodC9	C:201-371	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4kodC10	C:372-460	Histone-like	Histone-related	AAA+ ATPase lid domain
e4kodD1	D:22-106	cradle loop barrel	RIFT-related	double psi
e4kodD3	D:107-200	Cdc48 domain 2-like	Cdc48 domain 2-like	Cdc48 domain 2-like
e4kodD9	D:201-371	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4kodD10	D:372-460	Histone-like	Histone-related	AAA+ ATPase lid domain
e4kodE1	E:23-106	cradle loop barrel	RIFT-related	double psi
e4kodE3	E:107-200	Cdc48 domain 2-like	Cdc48 domain 2-like	Cdc48 domain 2-like
e4kodE9	E:201-371	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4kodE10	E:372-461	Histone-like	Histone-related	AAA+ ATPase lid domain
e4kodF1	F:23-106	cradle loop barrel	RIFT-related	double psi
e4kodF3	F:107-200	Cdc48 domain 2-like	Cdc48 domain 2-like	Cdc48 domain 2-like
e4kodF9	F:201-371	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4kodF10	F:372-460	Histone-like	Histone-related	AAA+ ATPase lid domain
e4kodG1	G:23-106	cradle loop barrel	RIFT-related	double psi
e4kodG3	G:107-200	Cdc48 domain 2-like	Cdc48 domain 2-like	Cdc48 domain 2-like
e4kodG9	G:201-371	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4kodG10	G:372-459	Histone-like	Histone-related	AAA+ ATPase lid domain
e4kodH1	H:22-106	cradle loop barrel	RIFT-related	double psi
e4kodH3	H:107-200	Cdc48 domain 2-like	Cdc48 domain 2-like	Cdc48 domain 2-like
e4kodH9	H:201-371	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4kodH10	H:372-459	Histone-like	Histone-related	AAA+ ATPase lid domain
e4kodI1	I:20-106	cradle loop barrel	RIFT-related	double psi
e4kodI3	I:107-200	Cdc48 domain 2-like	Cdc48 domain 2-like	Cdc48 domain 2-like
e4kodI9	I:201-371	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4kodI10	I:372-459	Histone-like	Histone-related	AAA+ ATPase lid domain
e4kodJ1	J:18-106	cradle loop barrel	RIFT-related	double psi
e4kodJ3	J:107-200	Cdc48 domain 2-like	Cdc48 domain 2-like	Cdc48 domain 2-like
e4kodJ9	J:201-371	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4kodJ10	J:372-462	Histone-like	Histone-related	AAA+ ATPase lid domain
e4kodK1	K:23-106	cradle loop barrel	RIFT-related	double psi
e4kodK3	K:107-200	Cdc48 domain 2-like	Cdc48 domain 2-like	Cdc48 domain 2-like
e4kodK9	K:201-371	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4kodK10	K:372-460	Histone-like	Histone-related	AAA+ ATPase lid domain
e4kodL1	L:18-106	cradle loop barrel	RIFT-related	double psi
e4kodL3	L:107-200	Cdc48 domain 2-like	Cdc48 domain 2-like	Cdc48 domain 2-like
e4kodL9	L:201-371	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4kodL10	L:372-459	Histone-like	Histone-related	AAA+ ATPase lid domain

Structural contacts of domain e4kodG9 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4kodK9	G:X,Y,Z->K:x,y,z	P-loop domains-related	Interaction Interface Pymol
e4kodL9	G:X,Y,Z->L:x,y,z	P-loop domains-related	Interaction Interface Pymol
e4kodL10	G:X,Y,Z->L:x,y,z	Histone-related	Interaction Interface Pymol
e4kodL3	G:X,Y,Z->L:x,y,z	Cdc48 domain 2-like	Interaction Interface Pymol
e4kodF10	G:-X+1,Y-1/2,-Z+1/2->F:x,y,z	Histone-related	Interaction Interface Pymol
e4kodE3	G:x,y,z->E:X,Y,Z	Cdc48 domain 2-like	Interaction Interface Pymol