Domain ID e4kvbM1

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  • A: alpha arrays
  • X: HhH/H2TH
  • H: H2TH
  • T: H2TH
  • F: Ribosomal_S13
UID: 001552541
Type: Automatic domain
Parent: e4v4vAM1
Range: M:2-126
Ligands: MG
PDB: 4kvb
PDB Description: 30S ribosomal protein S13
UniProt: P62655
Hsap BLAST neighbor: P62269
Species:

Structure of domain e4kvbM1

Domains in the same chain:

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e4kvbM1 M:2-126 HhH/H2TH H2TH H2TH

Domains in the same PDB:

e4kvbB1 B:6-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4kvbC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4kvbC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4kvbD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4kvbE2 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4kvbE1 E:73-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kvbF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4kvbG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4kvbH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4kvbH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4kvbI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kvbJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4kvbK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4kvbL1 L:5-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kvbM1 M:2-126 HhH/H2TH H2TH H2TH
e4kvbN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4kvbO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4kvbP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4kvbR1 R:16-88 HTH HTH tri-helical
e4kvbS1 S:2-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4kvbT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e4kvbM1 of H-group "H2TH":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4kvbS1 M:X,Y,Z->S:x,y,z Ribosomal protein S19 Interaction Interface Pymol
e4kvbI1 M:x,y,z->I:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol