Domain ID e4kyiD1

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: Ras
UID: 001322786
Type: Automatic domain
Parent: e1mh1A1
Range: D:19-182
Ligands: GNP MG
PDB: 4kyi
PDB Description: Ras-related protein Rab-5C
UniProt: P51148
Hsap BLAST neighbor: P51148
Species: Homo sapiens

Structure of domain e4kyiD1

Domains in the same chain:

e4kyiD1 D:19-182 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases

Domains in the same PDB:

e4kyiA1 A:17-401 Flavodoxin-like Class I glutamine amidotransferase-like FabD/lysophospholipase-like
e4kyiA2 A:426-557 ExoU toxin middle helical domain ExoU toxin middle helical domain ExoU toxin middle helical domain
e4kyiB1 B:19-182 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kyiC3 C:17-412 Flavodoxin-like Class I glutamine amidotransferase-like FabD/lysophospholipase-like
e4kyiC2 C:413-557 ExoU toxin middle helical domain ExoU toxin middle helical domain ExoU toxin middle helical domain
e4kyiD1 D:19-182 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kyiE3 E:17-412 Flavodoxin-like Class I glutamine amidotransferase-like FabD/lysophospholipase-like
e4kyiE2 E:413-558 ExoU toxin middle helical domain ExoU toxin middle helical domain ExoU toxin middle helical domain
e4kyiF1 F:19-182 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4kyiG1 G:17-401 Flavodoxin-like Class I glutamine amidotransferase-like FabD/lysophospholipase-like
e4kyiG2 G:427-556 ExoU toxin middle helical domain ExoU toxin middle helical domain ExoU toxin middle helical domain
e4kyiH1 H:19-182 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases

Structural contacts of domain e4kyiD1 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4kyiC2 D:x,y,z->C:X,Y,Z ExoU toxin middle helical domain Interaction Interface Pymol
e4kyiB1 D:x,y,z->B:X,Y,Z P-loop domains-related Interaction Interface Pymol
e4kyiG1 D:x,y,z->G:X,Y,Z-1 Class I glutamine amidotransferase-like Interaction Interface Pymol
e4kyiA1 D:x,y,z->A:X-1,Y,Z Class I glutamine amidotransferase-like Interaction Interface Pymol