Domain ID e4kzxD1

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  • A: a+b two layers
  • X: T-fold
  • H: Ribosomal protein S3-C
  • T: Ribosomal protein S3-C
  • F: Ribosomal_S3_C
UID: 001087360
Type: Automatic domain
Parent: e2uubC1
Range: D:92-227
PDB: 4kzx
PDB Description: 40S RIBOSOMAL PROTEIN S3
UniProt: G1TNM3
Hsap BLAST neighbor: P23396
Species: Oryctolagus cuniculus

Structure of domain e4kzxD1

Domains in the same chain:

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e4kzxD3 D:1-99 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4kzxD1 D:92-227 T-fold Ribosomal protein S3-C Ribosomal protein S3-C

Domains in the same PDB:

e4kzxa1 a:2-108 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4kzxA1 A:2-209 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4kzxb1 b:1-84 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4kzxB1 B:19-113 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e4kzxB2 B:114-233 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e4kzxc1 c:5-68 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kzxC3 C:38-119 N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p)
e4kzxC1 C:120-186 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4kzxC2 C:187-263 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kzxd1 d:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4kzxD3 D:1-99 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4kzxD1 D:92-227 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4kzxe1 e:75-133 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e)
e4kzxE3 E:1-116 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4kzxE2 E:117-175 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kzxE1 E:176-263 SH3 SH3 SH3
e4kzxf1 f:82-152 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4kzxF1 F:14-204 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4kzxg1 g:2-314 beta-propeller-like beta-propeller 7-bladed
e4kzxG1 G:1-237 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e4kzxH2 H:5-107 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e4kzxH1 H:108-194 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e4kzxI1 I:2-207 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e4kzxJ1 J:7-188 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4kzxK1 K:1-98 HTH HTH winged
e4kzxl1 l:29-113 Glucose permease domain IIB-like eIF1-like eIF1-like
e4kzxL1 L:1-158 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kzxM1 M:9-132 Bacillus chorismate mutase-like L30e-like L30e-like
e4kzxN2 N:2-82 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e4kzxN1 N:83-151 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4kzxO1 O:16-151 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4kzxP1 P:4-130 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4kzxQ1 Q:6-146 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kzxR1 R:1-126 HTH HTH FF domain
e4kzxS1 S:6-142 HhH/H2TH H2TH H2TH
e4kzxT1 T:4-144 HTH HTH winged
e4kzxU1 U:16-119 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4kzxV1 V:1-82 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e)
e4kzxW1 W:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4kzxW2 W:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4kzxX1 X:1-142 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kzxY1 Y:3-128 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e4kzxZ1 Z:41-115 HTH HTH winged

Structural contacts of domain e4kzxD1 of H-group "Ribosomal protein S3-C":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4kzxR1 D:X,Y,Z->R:x,y,z HTH Interaction Interface Pymol
e4kzxg1 D:X,Y,Z->g:x,y,z beta-propeller Interaction Interface Pymol
e4kzxC1 D:x,y,z->C:X,Y,Z dsRNA-binding domain-like Interaction Interface Pymol