Domain ID e4kzyc1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosomal_S28e
UID: 001087429
Type: Automatic domain
Parent: e1ny4A1
Range: c:5-68
PDB: 4kzy
PDB Description: 40S RIBOSOMAL PROTEIN S28
UniProt: G1TIB4
Hsap BLAST neighbor: P62857
Species: Oryctolagus cuniculus

Structure of domain e4kzyc1

Domains in the same chain:

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e4kzyc1 c:5-68 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e4kzya1 a:2-108 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4kzyA1 A:2-209 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4kzyb1 b:1-84 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4kzyB1 B:19-113 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e4kzyB2 B:114-233 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e4kzyc1 c:5-68 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kzyC2 C:38-119 N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p)
e4kzyC1 C:120-186 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4kzyC3 C:187-263 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kzyd1 d:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4kzyD3 D:1-99 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4kzyD1 D:92-227 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4kzye1 e:75-133 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e)
e4kzyE3 E:1-116 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4kzyE2 E:117-175 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kzyE1 E:176-263 SH3 SH3 SH3
e4kzyf1 f:82-152 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4kzyF1 F:14-204 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4kzyg1 g:2-314 beta-propeller-like beta-propeller 7-bladed
e4kzyG1 G:1-237 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e4kzyH2 H:5-107 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e4kzyH1 H:108-194 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e4kzyI1 I:2-207 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e4kzyJ1 J:7-188 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4kzyK1 K:1-98 HTH HTH winged
e4kzyl1 l:29-113 Glucose permease domain IIB-like eIF1-like eIF1-like
e4kzyL1 L:1-158 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kzyM1 M:9-132 Bacillus chorismate mutase-like L30e-like L30e-like
e4kzyn1 n:32-113 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kzyN2 N:2-82 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e4kzyN1 N:83-151 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4kzyO1 O:16-151 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4kzyP1 P:4-130 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4kzyQ1 Q:6-146 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kzyR1 R:1-126 HTH HTH FF domain
e4kzyS1 S:6-142 HhH/H2TH H2TH H2TH
e4kzyT1 T:4-144 HTH HTH winged
e4kzyU1 U:16-119 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4kzyV1 V:1-82 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e)
e4kzyW1 W:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4kzyW2 W:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4kzyX1 X:1-142 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kzyY1 Y:3-128 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e4kzyZ1 Z:41-115 HTH HTH winged

Structural contacts of domain e4kzyc1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4kzyF1 c:x,y,z->F:X,Y,Z Ribosomal protein S7 Interaction Interface Pymol
e4kzyO1 c:x,y,z->O:X,Y,Z Ribonuclease H-like Interaction Interface Pymol
e4kzya1 c:x,y,z->a:X,Y,Z LIM domain-like Interaction Interface Pymol