Domain ID e4kzza1

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  • A: few secondary structure elements
  • X: Glucocorticoid receptor-like
  • H: LIM domain-like
  • T: LIM domain-like
  • F: Ribosomal_S26e
UID: 001087468
Type: Automatic domain
Parent: e2xzm51
Range: a:2-108
PDB: 4kzz
PDB Description: 40S RIBOSOMAL PROTEIN S26
UniProt: G1TFE8
Hsap BLAST neighbor: P62854
Species: Oryctolagus cuniculus

Structure of domain e4kzza1

Domains in the same chain:

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e4kzza1 a:2-108 Glucocorticoid receptor-like LIM domain-like LIM domain-like

Domains in the same PDB:

e4kzza1 a:2-108 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4kzzA1 A:2-209 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4kzzb1 b:1-84 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4kzzB1 B:19-113 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e4kzzB2 B:114-233 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e4kzzc1 c:5-68 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kzzC3 C:38-119 N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p) N-terminal region in 40S ribosomal protein rpS2 (S5p)
e4kzzC1 C:120-186 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4kzzC2 C:187-263 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kzzd1 d:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4kzzD3 D:1-99 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4kzzD1 D:92-227 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4kzze1 e:75-133 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e)
e4kzzE3 E:1-116 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4kzzE2 E:117-175 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kzzE1 E:176-263 SH3 SH3 SH3
e4kzzf1 f:82-152 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4kzzF1 F:14-204 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4kzzg1 g:2-314 beta-propeller-like beta-propeller 7-bladed
e4kzzG1 G:1-237 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e4kzzH2 H:5-107 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e4kzzH1 H:108-194 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e4kzzI1 I:2-207 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e4kzzJ1 J:7-188 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4kzzK1 K:1-98 HTH HTH winged
e4kzzL1 L:1-158 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kzzM1 M:9-132 Bacillus chorismate mutase-like L30e-like L30e-like
e4kzzn1 n:32-113 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kzzN2 N:2-82 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e4kzzN1 N:83-151 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4kzzO1 O:16-151 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4kzzP1 P:4-130 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4kzzQ1 Q:6-146 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4kzzR1 R:1-126 HTH HTH FF domain
e4kzzS1 S:6-142 HhH/H2TH H2TH H2TH
e4kzzT1 T:4-144 HTH HTH winged
e4kzzU1 U:16-119 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4kzzV1 V:1-82 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e)
e4kzzW1 W:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4kzzW2 W:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4kzzX1 X:1-142 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4kzzY1 Y:3-128 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e4kzzZ1 Z:41-115 HTH HTH winged

Structural contacts of domain e4kzza1 of H-group "LIM domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4kzzO1 a:x,y,z->O:X,Y,Z Ribonuclease H-like Interaction Interface Pymol
e4kzzB2 a:x,y,z->B:X,Y,Z 40S ribosomal protein S3A C-terminal domain Interaction Interface Pymol
e4kzzB1 a:x,y,z->B:X,Y,Z 40S ribosomal protein S3A N-terminal domain Interaction Interface Pymol
e4kzzc1 a:X,Y,Z->c:x,y,z Nucleic acid-binding proteins Interaction Interface Pymol