Domain ID e4lfaJ1

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Ribosomal protein S10
  • T: Ribosomal protein S10
  • F: Ribosomal_S10
UID: 001299571
Type: Automatic domain
Parent: e2uubJ1
Range: J:3-101
Ligands: MG
PDB: 4lfa
PDB Description: RIBOSOMAL PROTEIN S10
UniProt: Q5SHN7
Hsap BLAST neighbor: P60866
Species:

Structure of domain e4lfaJ1

Domains in the same chain:

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e4lfaJ1 J:3-101 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10

Domains in the same PDB:

e4lfaB1 B:6-127,B:157-241 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4lfaC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4lfaC1 C:107-208 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4lfaD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4lfaE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4lfaE2 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4lfaF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4lfaG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4lfaH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4lfaH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4lfaI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4lfaJ1 J:3-101 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4lfaK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4lfaL1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4lfaM1 M:2-119 HhH/H2TH H2TH H2TH
e4lfaN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4lfaO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4lfaP1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4lfaQ1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4lfaR1 R:16-88 HTH HTH tri-helical
e4lfaS1 S:2-82 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4lfaT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e4lfaJ1 of H-group "Ribosomal protein S10":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4lfaN1 J:X,Y,Z->N:x,y,z LIM domain-like Interaction Interface Pymol
e4lfaC2 J:x,y,z->C:X,Y,Z KH-domains Interaction Interface Pymol
e4lfaJ1 J:x,y,z->J:-Y+1,-X+1,-Z+1/2 Ribosomal protein S10 Interaction Interface Pymol
e4lfaJ1 J:-Y+1,-X+1,-Z+1/2->J:x,y,z Ribosomal protein S10 Interaction Interface Pymol
e4lfaI1 J:x,y,z->I:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol