Domain ID e4lfbE2

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Ribosomal_S5_C
UID: 001299587
Type: Automatic domain
Parent: e1pkpA2
Range: E:74-155
Ligands: K MG
PDB: 4lfb
PDB Description: RIBOSOMAL PROTEIN S5
UniProt: Q5SHQ5
Species:

Structure of domain e4lfbE2

Domains in the same chain:

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e4lfbE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4lfbE2 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e4lfbB1 B:6-127,B:157-241 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4lfbC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4lfbC1 C:107-208 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4lfbD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4lfbE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4lfbE2 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4lfbF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4lfbG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4lfbH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4lfbH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4lfbI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4lfbJ1 J:3-101 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4lfbK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4lfbL1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4lfbM1 M:2-119 HhH/H2TH H2TH H2TH
e4lfbN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4lfbO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4lfbP1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4lfbQ1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4lfbR1 R:16-88 HTH HTH tri-helical
e4lfbS1 S:2-82 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4lfbT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e4lfbE2 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4lfbH1 E:X,Y,Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol
e4lfbH2 E:X,Y,Z->H:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol
e4lfbD1 E:x,y,z->D:X,Y,Z Ubiquitin-related Interaction Interface Pymol
e4lfbE1 E:x,y,z->E:Y,X,-Z dsRNA-binding domain-like Interaction Interface Pymol
e4lfbE1 E:Y,X,-Z->E:x,y,z dsRNA-binding domain-like Interaction Interface Pymol