Domain ID e4lfcB1

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  • A: a/b three-layered sandwiches
  • X: Flavodoxin-like
  • H: Ribosomal protein S2/SIS domain
  • T: Ribosomal protein S2/SIS domain
  • F: Ribosomal_S2
UID: 001550081
Type: Automatic domain
Parent: e4z8c1b1
Range: B:6-127,B:157-241
Ligands: MG
PDB: 4lfc
PDB Description: RIBOSOMAL PROTEIN S2
UniProt: P80371
Hsap BLAST neighbor: Q9Y399
Species:

Structure of domain e4lfcB1

Domains in the same chain:

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e4lfcB1 B:6-127,B:157-241 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain

Domains in the same PDB:

e4lfcB1 B:6-127,B:157-241 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e4lfcC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4lfcC1 C:107-208 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4lfcD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e4lfcE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4lfcE2 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4lfcF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4lfcG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4lfcH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4lfcH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4lfcI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4lfcJ1 J:3-101 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4lfcK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4lfcL1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4lfcM1 M:2-119 HhH/H2TH H2TH H2TH
e4lfcN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4lfcO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4lfcP1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4lfcQ1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4lfcR1 R:16-88 HTH HTH tri-helical
e4lfcS1 S:2-82 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e4lfcT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e4lfcB1 of H-group "Ribosomal protein S2/SIS domain":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4lfcB1 B:x,y,z->B:Y,X,-Z Ribosomal protein S2/SIS domain Interaction Interface Pymol
e4lfcB1 B:Y,X,-Z->B:x,y,z Ribosomal protein S2/SIS domain Interaction Interface Pymol
e4lfcH2 B:X,Y,Z->H:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol