UID: | 001111576 |
---|---|
Type: | Automatic domain |
Parent: | e2a6eF2 |
Range: | F:510-612 |
PDB: | 4ljz |
PDB Description: | RNA polymerase sigma factor RpoD |
UniProt: | P00579 |
Species: |
Structure of domain e4ljzF2
Domains in the same chain:
e4ljzF3 | F:114-167,F:213-448 | Sigma2 domain-like | Sigma2 domain of RNA polymerase sigma factors | Sigma2 domain of RNA polymerase sigma factors |
e4ljzF1 | F:449-509 | HTH | HTH | tri-helical |
e4ljzF2 | F:510-612 | HTH | HTH | tri-helical |
Domains in the same PDB:
Structural contacts of domain e4ljzF2 of H-group "HTH":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
Domain ID | Symmetry operator | H-group | Visualization |
---|---|---|---|
e4ljzD1 | F:x,y,z->D:X,Y,Z | N-terminal domain in RNA-polymerase beta-prime subunit | Interaction Interface Pymol |
e4ljzD3 | F:x,y,z->D:X,Y,Z | inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit | Interaction Interface Pymol |
e4ljzD2 | F:x,y,z->D:X,Y,Z | RIFT-related | Interaction Interface Pymol |
e4ljzC26 | F:x,y,z->C:X,Y,Z | C-terminal domain in beta subunit of DNA dependent RNA-polymerase | Interaction Interface Pymol |
e4ljzC10 | F:x,y,z->C:X,Y,Z | alpha/beta-Hammerhead/Barrel-sandwich hybrid | Interaction Interface Pymol |
e4ljzC1 | F:x,y,z->C:X-1/2,-Y-1/2,-Z | alpha/beta-Hammerhead/Barrel-sandwich hybrid | Interaction Interface Pymol |
e4ljzC19 | F:x,y,z->C:X-1/2,-Y-1/2,-Z | N-terminal domain in beta subunit of DNA dependent RNA-polymerase | Interaction Interface Pymol |
e4ljzC8 | F:x,y,z->C:X-1/2,-Y-1/2,-Z | barrel domain in beta subunit of DNA dependent RNA-polymerase | Interaction Interface Pymol |