ECOD: domain e4m5dB1

Domain ID e4m5dB1

A: a+b two layers
X: Alpha-beta plaits
H: RNA-binding domain, RBD
T: RNA-binding domain, RBD
F: RRM_Rrp7

UID:	001117798
Type:	Manual and representative domain
Range:	B:3-189
Ligands:	PGE
PDB:	4m5d
PDB Description:	Ribosomal RNA-processing protein 7
UniProt:	P25368
Species:

Domains in the same chain:

Download Pymol

e4m5dB1	B:3-189	Alpha-beta plaits	RNA-binding domain, RBD	RNA-binding domain, RBD

Domains in the same PDB:

e4m5dA1	A:81-356	Nucleotidyltransferase-like	Nucleotidyltransferase	Nucleotidyltransferase
e4m5dA2	A:357-514	HhH/H2TH	SAM/DNA-glycosylase	PAP/OAS1 substrate-binding domain
e4m5dA3	A:515-698	Alpha-beta plaits	PAP/Archaeal CCA-adding enzyme, C-terminal domain	PAP/Archaeal CCA-adding enzyme, C-terminal domain
e4m5dA4	A:699-905	Nucleotidyltransferase-like	Nucleotidyltransferase	Nucleotidyltransferase
e4m5dA5	A:906-1091	HhH/H2TH	SAM/DNA-glycosylase	PAP/OAS1 substrate-binding domain
e4m5dA6	A:1092-1237	Alpha-beta plaits	PAP/Archaeal CCA-adding enzyme, C-terminal domain	PAP/Archaeal CCA-adding enzyme, C-terminal domain
e4m5dB1	B:3-189	Alpha-beta plaits	RNA-binding domain, RBD	RNA-binding domain, RBD

Structural contacts of domain e4m5dB1 of H-group "RNA-binding domain, RBD":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4m5dA6	B:x,y,z->A:X,Y,Z	PAP/Archaeal CCA-adding enzyme, C-terminal domain	Interaction Interface Pymol
e4m5dA4	B:x,y,z->A:X,Y,Z	Nucleotidyltransferase	Interaction Interface Pymol
e4m5dA3	B:-X+1/2,Y-1/2,-Z+1/2->A:x,y,z	PAP/Archaeal CCA-adding enzyme, C-terminal domain	Interaction Interface Pymol
e4m5dA4	B:X-1/2,-Y+3/2,-Z+1/2->A:x,y,z	Nucleotidyltransferase	Interaction Interface Pymol
e4m5dB1	B:x,y,z->B:X-1/2,-Y+3/2,-Z+1/2	RNA-binding domain, RBD	Interaction Interface Pymol
e4m5dB1	B:X-1/2,-Y+3/2,-Z+1/2->B:x,y,z	RNA-binding domain, RBD	Interaction Interface Pymol