Domain ID e4mbzB1

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  • A: beta sandwiches
  • X: jelly-roll
  • H: Nucleoplasmin-like/VP (viral coat and capsid proteins)
  • T: Nucleoplasmin-like/VP (viral coat and capsid proteins)
  • F: Polyoma_coat
UID: 001123267
Type: Automatic domain
Parent: e1vpsA1
Range: B:25-299
Ligands: CA CL EDO IPA
PDB: 4mbz
PDB Description: Major Capsid Protein VP1
UniProt: P04010
Species:

Structure of domain e4mbzB1

Domains in the same chain:

e4mbzB1 B:25-299 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)

Domains in the same PDB:

e4mbzA1 A:25-301 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4mbzB1 B:25-299 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4mbzC1 C:25-299 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4mbzD1 D:26-299 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4mbzE1 E:25-301 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4mbzF1 F:25-298 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4mbzG1 G:25-298 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4mbzH1 H:25-298 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4mbzI1 I:25-299 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4mbzJ1 J:24-300 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)

Structural contacts of domain e4mbzB1 of H-group "Nucleoplasmin-like/VP (viral coat and capsid proteins)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4mbzA1 B:x,y,z->A:X,Y,Z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e4mbzC1 B:X,Y,Z->C:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e4mbzI1 B:X,Y,Z->I:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e4mbzH1 B:X-1/2,Y-1/2,Z->H:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e4mbzE1 B:X-1/2,Y-1/2,Z->E:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e4mbzJ1 B:X,Y,Z->J:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e4mbzE1 B:-X+1,Y,-Z+1->E:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e4mbzD1 B:-X+1,Y,-Z+1->D:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e4mbzF1 B:X,Y,Z->F:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol