Domain ID e4mbzD1

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  • A: beta sandwiches
  • X: jelly-roll
  • H: Nucleoplasmin-like/VP (viral coat and capsid proteins)
  • T: Nucleoplasmin-like/VP (viral coat and capsid proteins)
  • F: Polyoma_coat
UID: 001123269
Type: Automatic domain
Parent: e1vpsA1
Range: D:26-299
Ligands: CA CL EDO IPA
PDB: 4mbz
PDB Description: Major Capsid Protein VP1
UniProt: P04010
Species:

Structure of domain e4mbzD1

Domains in the same chain:

e4mbzD1 D:26-299 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)

Domains in the same PDB:

e4mbzA1 A:25-301 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4mbzB1 B:25-299 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4mbzC1 C:25-299 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4mbzD1 D:26-299 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4mbzE1 E:25-301 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4mbzF1 F:25-298 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4mbzG1 G:25-298 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4mbzH1 H:25-298 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4mbzI1 I:25-299 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)
e4mbzJ1 J:24-300 jelly-roll Nucleoplasmin-like/VP (viral coat and capsid proteins) Nucleoplasmin-like/VP (viral coat and capsid proteins)

Structural contacts of domain e4mbzD1 of H-group "Nucleoplasmin-like/VP (viral coat and capsid proteins)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4mbzC1 D:x,y,z->C:X,Y,Z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e4mbzE1 D:X,Y,Z->E:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e4mbzG1 D:X,Y,Z->G:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e4mbzH1 D:X,Y,Z->H:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e4mbzC1 D:x,y,z->C:-X+1,Y,-Z+1 Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e4mbzB1 D:x,y,z->B:-X+1,Y,-Z+1 Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol
e4mbzI1 D:X,Y,Z->I:x,y,z Nucleoplasmin-like/VP (viral coat and capsid proteins) Interaction Interface Pymol